PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG187500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 183aa    MW: 18875.7 Da    PI: 11.6763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG187500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85e-053985654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                           + rr R+r+   ++eL  +lP+ +   +s++ +   i+  Av  +k L
  Pavir.3NG187500.1.p 39 RDVQRRLRARVSALYAELGAMLPSlP---TSRRATQEKIVDAAVARVKAL 85
                         6678********************66...9999***********988887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.33E-632101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.7563385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-43593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAAAPAGGLP LELSLDTVTA PPAATAAESA VERRRRRVRD VQRRLRARVS ALYAELGAML  60
PSLPTSRRAT QEKIVDAAVA RVKALEDTAA ALESCRGAPR SGREVALSRG TVTVSARLPA  120
PEPAGALRRV VEAFERRGAR VLVATMARHG GGEGGAVVVT VTAAAAAPEV VEMIRADIAS  180
IN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443294.12e-36hypothetical protein SORBIDRAFT_08g017040
TrEMBLK3ZEV73e-39K3ZEV7_SETIT; Uncharacterized protein
STRINGSi025105m8e-39(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931